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1

The extracellular biology of the lactobacilli

Michiel Kleerebezem, Pascal Hols, Elvis Bernard, Thomas Rolain, Miaomiao Zhou, Roland J. Siezen, Peter A. Bron

Journal:

FEMS Microbiology Reviews

Year:

2010

Language:

english

File:

PDF, 854 KB

english, 2010

2

The proteolytic system of lactic acid bacteria revisited: a genomic comparison

Mengjin Liu, Jumamurat R Bayjanov, Bernadet Renckens, Arjen Nauta, Roland J Siezen

Journal:

Year:

2010

Language:

english

File:

PDF, 4.45 MB

english, 2010

3

The indefinite self-association of lysozyme: consideration of composition-dependent activity coefficients

P.R. Willis, L.W. Nichol, R.J. Siezen

Journal:

Biophysical Chemistry

Year:

1980

Language:

english

File:

PDF, 1.17 MB

english, 1980

4

Structural analysis and proteolytic activation of Enterococcus faecalis cytolysin, a novel lantibiotic

Mary C. Booth, Charles P. Bogie, Hans-Georg Sahl, Roland J. Siezen, Kenneth L. Hatter, Michael S. Gilmore

Journal:

Molecular Microbiology

Year:

1996

Language:

english

File:

PDF, 1.03 MB

english, 1996

5

Impact of genomics on microbial food safety

Tjakko Abee, Willem van Schaik, Roland J. Siezen

Journal:

Trends in Biotechnology

Year:

2004

Language:

english

File:

PDF, 351 KB

english, 2004

6

The human gut microbiome: are we our enterotypes?

Roland J. Siezen, Michiel Kleerebezem

Journal:

Microbial Biotechnology

Year:

2011

Language:

english

File:

PDF, 534 KB

english, 2011

7

Flavour formation from amino acids by lactic acid bacteria: predictions from genome sequence analysis

Richard van Kranenburg, Michiel Kleerebezem, Johan van Hylckama Vlieg, Björn M Ursing, Jos Boekhorst, Bart A Smit, Eman H.E Ayad, Gerrit Smit, Roland J Siezen

Journal:

International Dairy Journal

Year:

2002

Language:

english

File:

PDF, 418 KB

english, 2002

8

Comparative Genomics of Enzymes in Flavor-Forming Pathways from Amino Acids in Lactic Acid Bacteria

Liu, M., Nauta, A., Francke, C., Siezen, R. J.

Journal:

Applied and Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 1.55 MB

english, 2008

9

PanCGHweb: a web tool for genotype calling in pangenome CGH data

Bayjanov, J. R., Siezen, R. J., van Hijum, S. A. F. T.

Journal:

Year:

2010

Language:

english

File:

PDF, 132 KB

english, 2010

10

Exploring Lactobacillus plantarum Genome Diversity by Using Microarrays

Molenaar, D., Bringel, F., Schuren, F. H., de Vos, W. M., Siezen, R. J., Kleerebezem, M.

Journal:

Journal of Bacteriology

Year:

2005

Language:

english

File:

PDF, 301 KB

english, 2005

11

In Silico Prediction of Horizontal Gene Transfer Events in Lactobacillus bulgaricus and Streptococcus thermophilus Reveals Protocooperation in Yogurt Manufacturing

Liu, M., Siezen, R. J., Nauta, A.

Journal:

Applied and Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 486 KB

english, 2009

12

Safety of the Surrogate Microorganism Enterococcus faecium NRRL B-2354 for Use in Thermal Process Validation

Kopit, L. M., Kim, E. B., Siezen, R. J., Harris, L. J., Marco, M. L.

Journal:

Applied and Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 10.76 MB

english, 2014

13

Assessment of Nutritional Risk in the Elderly

Nikolaus, Thorsten, Bach, Matthias, Siezen, Saskia, Volkert, Dorothee, Oster, Peter, Schlierf, G&uuml, nter

Journal:

Annals of Nutrition & Metabolism

Year:

1995

File:

PDF, 1.12 MB

1995

14

Polymorphisms in the genes involved in the arachidonic acid-pathway, fish consumption and the risk of colorectal cancer

Christine L.E. Siezen, H. Bas Bueno-de-Mesquita, Petra H.M. Peeters, Nicolien R. Kram, Marina van Doeselaar, Henk J. van Kranen

Journal:

International Journal of Cancer

Year:

2006

Language:

english

File:

PDF, 109 KB

english, 2006

15

Opposing associations of serum n-3 and n-6 polyunsaturated fatty acids with colorectal adenoma risk: An endoscopy-based case–control study

Gerda K. Pot, Anouk Geelen, Else-Mariëtte B. van Heijningen, Christine L.E. Siezen, Henk J. van Kranen, Ellen Kampman

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 74 KB

english, 2008

16

The study of multiple polymerization equilibria by glass bead exclusion chromatography with allowance for thermodynamic non-ideality effects

L.W. Nichol, R.J. Siezen, D.J. Winzor

Journal:

Biophysical Chemistry

Year:

1978

Language:

english

File:

PDF, 913 KB

english, 1978

17

Chromatographic evidence of the self-association of oxyhemoglobin in concentrated solutions: its biological implications

L.W. Nichol, R.J. Siezen, D.J. Winzor

Journal:

Biophysical Chemistry

Year:

1979

Language:

english

File:

PDF, 1.05 MB

english, 1979

18

Exclusion chromatography of concentrated hemoglobin solutions: Comparison of the self-association behavior of the oxy and deoxy forms of the α2β2 species

R.J. Siezen, L.W. Nichol, D.J. Winzor

Journal:

Biophysical Chemistry

Year:

1981

Language:

english

File:

PDF, 897 KB

english, 1981

19

Interactions of lens proteins: Self-association and mixed-association studies of bovine α-crystallin and γ-crystallin

R.J. Siezen, E.A. Owen

Journal:

Biophysical Chemistry

Year:

1983

Language:

english

File:

PDF, 1.31 MB

english, 1983

20

Interactions of lens proteins: Ultrafiltration is unsuitable to detect self- or mixed-association

Roland J. Siezen

Journal:

Biophysical Chemistry

Year:

1984

Language:

english

File:

PDF, 600 KB

english, 1984

21

Models for the analytical ultracentrifuge behavior of helix pomatia α-hemocyanin: I. Experimental testing of previous models

Roland J. Siezen, Ernst F.J. Van Bruggen, Mei-Sheng Tai, Michael C. Crossin, Gerson Kegeles

Journal:

Biophysical Chemistry

Year:

1984

Language:

english

File:

PDF, 3.96 MB

english, 1984

22

Amino acids in suspended particulate matter from oceanic and coastal waters of the Pacific

R.J. Siezen, T.H. Mague

Journal:

Marine Chemistry

Year:

1978

Language:

english

File:

PDF, 823 KB

english, 1978

23

Corrigendum to ‘The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale’ [Inf. Gen. Evol. 10 (2010) 108–114]

Anita C. Schürch, Kristin Kremer, Albert Kiers, Olaf Daviena, Martin J. Boeree, Roland J. Siezen, Noel H. Smith, Dick van Soolingen

Journal:

Infection, Genetics and Evolution

Year:

2010

Language:

english

File:

PDF, 64 KB

english, 2010

24

Genome data mining of lactic acid bacteria: the impact of bioinformatics

Roland J Siezen, Frank HJ van Enckevort, Michiel Kleerebezem, Bas Teusink

Journal:

Current Opinion in Biotechnology

Year:

2004

Language:

english

File:

PDF, 1.02 MB

english, 2004

25

Natural diversity and adaptive responses of Lactococcus lactis

Johan ET van Hylckama Vlieg, Jan LW Rademaker, Herwig Bachmann, Douwe Molenaar, William J Kelly, Roland J Siezen

Journal:

Current Opinion in Biotechnology

Year:

2006

Language:

english

File:

PDF, 308 KB

english, 2006

26

The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale

Anita C. Schürch, Kristin Kremer, Albert Kiers, Olaf Daviena, Martin J. Boeree, Roland J. Siezen, Noel H. Smith, Dick van Soolingen

Journal:

Infection, Genetics and Evolution

Year:

2010

Language:

english

File:

PDF, 171 KB

english, 2010

27

Mutations in the regulatory network underlie the recent clonal expansion of a dominant subclone of the Mycobacterium tuberculosis Beijing genotype

Anita C. Schürch, Kristin Kremer, Robin M. Warren, Nguyen V. Hung, Yanlin Zhao, Kanglin Wan, Martin J. Boeree, Roland J. Siezen, Noel H. Smith, Dick van Soolingen

Journal:

Infection, Genetics and Evolution

Year:

2011

Language:

english

File:

PDF, 413 KB

english, 2011

28

Gas-liquid chromatography of the N-heptafluorobutyryl isobutyl esters of fifty biologically interesting amino acids

Roland J. Siezen, Timothy H. Mague

Journal:

Journal of Chromatography A

Year:

1977

Language:

english

File:

PDF, 721 KB

english, 1977

29

Optimal resolution of eye lens γ-crystallins by cation-exchange high-performance liquid chromatography on synchropak CM300

Roland J. Siezen, Elizabeth D. Kaplan

Journal:

Journal of Chromatography A

Year:

1988

Language:

english

File:

PDF, 757 KB

english, 1988

30

Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior

Christof Francke, Tom Groot Kormelink, Yanick Hagemeijer, Lex Overmars, Vincent Sluijter, Roy Moezelaar, Roland J Siezen

Journal:

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

31

Genomic diversity and versatility ofLactobacillus plantarum, a natural metabolic engineer

Roland J Siezen, Johan ET van Hylckama Vlieg

Journal:

Microbial Cell Factories

Year:

2011

Language:

english

File:

PDF, 739 KB

english, 2011

32

Interleukin-9 polymorphism in infants with respiratory syncytial virus infection: An opposite effect in boys and girls

Annemieke Schuurhof, Louis Bont, Christine L. E. Siezen, Hennie Hodemaekers, Hans C. van Houwelingen, Tjeerd G. Kimman, Barbara Hoebee, Jan L. L. Kimpen, Riny Janssen

Journal:

Pediatric Pulmonology

Year:

2010

Language:

english

File:

PDF, 73 KB

english, 2010

33

Subtilases: The superfamily of subtilisin-like serine proteases

Roland J. Siezen, Jack A. M. Leunissen

Journal:

Protein Science

Year:

1997

Language:

english

File:

PDF, 5.30 MB

english, 1997

34

Evolution of prokaryotic subtilases: Genome-wide analysis reveals novel subfamilies with different catalytic residues

Roland J. Siezen, Bernadet Renckens, Jos Boekhorst

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 693 KB

english, 2007

35

Comparison of lantibiotic gene clusters and encoded proteins

Roland J. Siezen, Oscar P. Kuipers, Willem M. Vos

Journal:

Antonie van Leeuwenhoek

Year:

1996

Language:

english

File:

PDF, 1.12 MB

english, 1996

36

Furin is a subtilisin-like proprotein processing enzyme in higher eukaryotes

Wim J. M. Ven, Jan Voorberg, Ruud Fontijn, Hans Pannekoek, Ans M. W. Ouweland, Hans L. P. Duijnhoven, Anton J. M. Roebroek, Roland J. Siezen

Journal:

Molecular Biology Reports

Year:

1990

Language:

english

File:

PDF, 975 KB

english, 1990

37

Molecular characterization of fervidolysin, a subtilisin-like serine protease from the thermophilic bacteriumFervidobacterium pennivorans

Leon D. Kluskens, Wilfried G. Voorhorst, Roland J. Siezen, Ruth M. Schwerdtfeger, Garabed Antranikian, John van der Oost, Willem M. de Vos

Journal:

Year:

2002

Language:

english

File:

PDF, 256 KB

english, 2002

38

Dietary modulation and structure prediction of rat mucosal pentraxin (Mptx) protein and loss of function in humans

Cindy van der Meer-van Kraaij, Roland Siezen, Evelien Kramer, Marjolein Reinders, Hans Blokzijl, Roelof van der Meer, Jaap Keijer

Journal:

Genes & Nutrition

Year:

2007

Language:

english

File:

PDF, 465 KB

english, 2007

39

Metabolic models for rational improvement of lactic acid bacteria as cell factories

E.J. Smid, F.J.H. van Enckevort, A. Wegkamp, J. Boekhorst, D. Molenaar, J. Hugenholtz, R.J. Siezen, B. Teusink

Journal:

Journal of Applied Microbiology

Year:

2005

Language:

english

File:

PDF, 414 KB

english, 2005

40

Maturation pathway of nisin and other lantibiotics: post-translationally modified antimicrobial peptides exported by Gram-positive bacteria

Willem M. De Vos, Oscar P. Kuipers, Jan Roelof Van Der Meer, Roland J. Siezen

Journal:

Molecular Microbiology

Year:

1995

Language:

english

File:

PDF, 1.25 MB

english, 1995

41

The identification of response regulator-specific binding sites reveals new roles of two-component systems in Bacillus cereus and closely related low-GC Gram-positives

Mark de Been, Marieke J. Bart, Tjakko Abee, Roland J. Siezen, Christof Francke

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 3.19 MB

english, 2008

42

Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches

Roland J. Siezen, Vesela A. Tzeneva, Anna Castioni, Michiel Wels, Hoa T. K. Phan, Jan L. W. Rademaker, Marjo J. C. Starrenburg, Michiel Kleerebezem, Douwe Molenaar, Johan E. T. Van Hylckama Vlieg

Journal:

Environmental Microbiology

Year:

2010

Language:

english

File:

PDF, 610 KB

english, 2010

43

A novel hybrid kinase is essential for regulating the σB-mediated stress response of Bacillus cereus

Mark De Been, Marcel H. Tempelaars, Willem Van Schaik, Roy Moezelaar, Roland J. Siezen, Tjakko Abee

Journal:

Environmental Microbiology

Year:

2010

Language:

english

File:

PDF, 784 KB

english, 2010

44

Genetic variations in regulatory pathways of fatty acid and glucose metabolism are associated with obesity phenotypes: a population-based cohort study

van den Berg, S W, Dollé, M E T, Imholz, S, van der A, D L, van ‘t Slot, R, Wijmenga, C, Verschuren, W M M, Strien, C, Siezen, C L E, Hoebee, B

Journal:

International Journal of Obesity

Year:

2009

Language:

english

File:

PDF, 190 KB

english, 2009

45

Multi-domain, cell-envelope proteinases of lactic acid bacteria

Roland J. Siezen

Journal:

Antonie van Leeuwenhoek

Year:

1999

Language:

english

File:

PDF, 522 KB

english, 1999

46

Lactic acid bacteria: genetics, metabolism and applications

R.J. Siezen, J. Kok, T. Abee, G. Schaafsma

Journal:

Antonie van Leeuwenhoek

Year:

2002

Language:

english

File:

PDF, 25 KB

english, 2002

47

Visualization for genomics: the Microbial Genome Viewer

Kerkhoven, R., van Enckevort, F. H. J., Boekhorst, J., Molenaar, D., Siezen, R. J.

Journal:

Year:

2004

Language:

english

File:

PDF, 435 KB

english, 2004

48

Three classes of sulfhydryl group in bovine α-crystallin according to reactivity to various reagents

Roland J. Siezen, Fer G.M. Coenders, Herman J. Hoenders

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure

Year:

1978

Language:

english

File:

PDF, 521 KB

english, 1978

49

Physicochemical characterization of lens proteins of the squid nototodarus gouldi and comparison with vertebrate crystallins

Roland J. Siezen, Denis C. Shaw

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1982

Language:

english

File:

PDF, 1.74 MB

english, 1982

50

Structural homology of lens crystallins: II. Homology expressed by correlation coefficients and hydropathy profiles

Roland J. Siezen, Elisabeth A. Owen, Yasushi Kubota, Tatsuo Ooi

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1983

Language:

english

File:

PDF, 631 KB

english, 1983

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